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CADD and Bioinformatics CADD and Bioinformatics

CADD and Bioinformatics

We provide wide range of standalone and integrated CADD & Informatics services to enable candidate progression at every stage of the program.

We follow a holistic approach to discovery projects by studying the target of interest and the different pathways. We have standardized procedures and highly-skilled scientists for solving complex problems related to discovery. The CADD facility routinely supports discovery projects starting from target identification to clinical positioning of the candidate compound. We have a wide range of tools available for compound optimization. Also, we have proven expertise in collaborative small molecule, PROTAC and peptide drug discovery projects.

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Various Techniques and Tools, CADD & Informatics

Virtual screening

Virtual screening is a powerful modeling technique to identify novel hit compounds in any discovery program. It is routinely deployed in drug discovery projects for compound ideation and conceptualization. Virtual screening has multiple applications including hit scouting and hit-to-lead optimization.

The techniques deal with computational or in silico analog of biological screening to score, rank, and/or filter a set of structures using one or more computational procedures. This helps to decide which compounds to screen, which libraries to synthesize, and which compounds to purchase from an external source. Virtual screening uses both structures, ligand/compound-guided computational methods, or a combination of both.

We have access to more than two billion commercially available compounds’ databases. This database is routinely used to carry out virtual screening studies to facilitate the compound design and ideation.

Structure-based design approach

Structure-based design approach exploits disease-related targets by experimentally determining 3-dimensional structure (e.g. X-ray, NMR, or Cryo-EM) or homology model (in case of unavailability of experimental structure). This method is performed to predict the binding pose of the molecule in the binding site and estimate probable binding affinity or a score representing the strength of binding.

We use docking and molecular dynamics simulation to shortlist compounds that may become a good hit or lead for a project.

Ligand-based design approach

Ligand or compound-based design is another powerful modeling technique used in CADD. Some of the most used techniques routinely deployed at APSL include pharmacophore modeling, quantitative structure-activity relationship (QSAR), or knowledge-based expert methods, for compound design and ideation. We use a ligand-based design approach in de novo, scaffold hopping, ligand hybridization, fragment-linking and related techniques. The ligand-based approach is not limited to compound designs but is also deployed in a predictive model. Predictive models built using AI/ML techniques are used at our facility to determine compound potency, selectivity and Physico-chemical properties. This in turn facilitates project progress.

Tools and software

Our CADD & bioinformatics facility are equipped with a state-of-the-art “Nanome” interactive virtual reality platform. This is supplemented by the acclaimed "Molsoft" commercial suite of software to carry out all modeling studies. Additionally, our team uses open-source CADD-related software (e.g. KNIME, Cytoscape, and Datawarrior) to enrich modeling and simulation-related work. We use a public-domain database to enrich our understanding of disease biology and chemical space. Our facility is equipped with a high-end workstation to cater to the need for CPU/GPU intensive simulation and AI/ML-related activity.

Why Aurigene CADD and Bioinformatics Services?

3-D virtual reality facility

High-end software for simulation & modelling (MolSoft)

Team lead by domain expert in CADD and Informatics

Other Services

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We understand that clear communication is essential to successful collaborations, and that's why we have a dedicated team that is always ready to help you. Whether you have questions about our services, want to discuss a potential partnership, or simply want to learn more about our company, we're here to help.

Our team of experts is dedicated to providing personalised solutions tailored to your unique needs. So, please don't hesitate to reach out to us. We look forward to hearing from you and helping you achieve your business goals.

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